27 Feb 2006 clmimac 1.006, 06-058
clmimac - Interpret Matrices (c.q. MCL iterands output by mcl) As Clusterings.
clmimac -imx <fname> [options]
clmimac -imx fname (input file) [-o fname (name/stem for output)] [-dag fname (output DAG)] [--enstrict (remove overlap)] [-sort str (size|revsize|lex|none)] [-h (list help)] [--apropos (list synopsis of all options)]
Use clmimac to interpret matrices (as clusterings) output by mcl using mcl's -dump ite option.
Use clmimac only if you have a special reason; the normal usage of mcl is to do multiple runs for varying -I parameters and use the clusterings output by mcl itself. One reason is if you are interested in clusterings with overlap; early MCL iterands generally induce clusterings possessing overlap. Another reason is to investigate how the cluster structure associated with the MCL process evolves over time.
-imx fname (input file) | ||
The input file is presumably an MCL iterand resulting
from the mcl option -dump ite.
| ||
-o fname (file name/stem) | ||
Write to file named fname.
| ||
-dag fname (output DAG) | ||
Write the DAG (directed acyclic graph) constructed from the input to
file. This DAG is constructed according to the structure associated
with diagonally positive semi-definite matrices as described
in the PhD thesis Graph clustering by flow simulation.
Consult mclfamily for references.
| ||
-sort str (size|revsize|lex|none) | ||
Sort the clusters either by increasing size, decreasing size,
lexicographically by the indices they contain, or use the clustering
exactly as obtained from the interpretation routine.
| ||
--enstrict (remove overlap) | ||
Remove overlap should it be found, by allocating the nodes
in overlap to the first cluster in which they were found.
| ||
-h (list help) | ||
Print help, this could possibly be the same output as
supplied with --apropos.
| ||
--apropos (list synopsis of all options) | ||
List a one-line synopsis for all options.
|
mclfamily for an overview of all the documentation and the utilities in the mcl family.