org.emboss.jemboss.gui.sequenceChooser
Class InputSequenceAttributes

java.lang.Object
  |
  +--org.emboss.jemboss.gui.sequenceChooser.InputSequenceAttributes

public class InputSequenceAttributes
extends java.lang.Object

Creates the input sequence attibutes window

Author:
T. J. Carver

Field Summary
private  javax.swing.JComboBox dbs
           
private  java.lang.String[] ff
           
private  javax.swing.JComboBox fileFormats
           
private  boolean fvis
           
private  javax.swing.JRadioButton lower
           
private  javax.swing.JRadioButton nucleotide
           
private  javax.swing.JRadioButton protein
           
private  javax.swing.JRadioButton rev
           
private  javax.swing.JScrollPane rscroll
           
private  TextFieldInt sbeg
           
private  javax.swing.JTextField sdbName
           
private  TextFieldInt send
           
private  javax.swing.JTextField sID
           
private  TextFieldSink sopenFile
           
private  javax.swing.JTextField UFO
           
private  javax.swing.JRadioButton upper
           
 
Constructor Summary
InputSequenceAttributes(java.lang.String[] db, FileChooser fc)
           
 
Method Summary
 java.lang.String getBegSeq()
           
 java.lang.String getEndSeq()
           
 java.lang.String getFormatChoosen()
           
 java.lang.String getInputSeqAttr(int seq)
           
 javax.swing.JScrollPane getJScrollPane()
           
 boolean isBeginSeqDefault()
           
 boolean isDBNameDefault()
           
 boolean isEndSeqDefault()
           
 boolean isOpenFileDefault()
           
 boolean isSIDDefault()
           
 boolean isUFODefault()
           
 void setBegSeq(int iseq)
           
 void setBegSeq(java.lang.String s)
           
 void setEndSeq(int iseq)
           
 void setEndSeq(java.lang.String s)
           
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Field Detail

sbeg

private TextFieldInt sbeg

send

private TextFieldInt send

sopenFile

private TextFieldSink sopenFile

sdbName

private javax.swing.JTextField sdbName

sID

private javax.swing.JTextField sID

UFO

private javax.swing.JTextField UFO

dbs

private javax.swing.JComboBox dbs

fileFormats

private javax.swing.JComboBox fileFormats

rev

private javax.swing.JRadioButton rev

nucleotide

private javax.swing.JRadioButton nucleotide

protein

private javax.swing.JRadioButton protein

lower

private javax.swing.JRadioButton lower

upper

private javax.swing.JRadioButton upper

rscroll

private javax.swing.JScrollPane rscroll

fvis

private boolean fvis

ff

private java.lang.String[] ff
Constructor Detail

InputSequenceAttributes

public InputSequenceAttributes(java.lang.String[] db,
                               FileChooser fc)
Method Detail

getJScrollPane

public javax.swing.JScrollPane getJScrollPane()

setBegSeq

public void setBegSeq(int iseq)

setEndSeq

public void setEndSeq(int iseq)

setBegSeq

public void setBegSeq(java.lang.String s)

setEndSeq

public void setEndSeq(java.lang.String s)

getBegSeq

public java.lang.String getBegSeq()

getEndSeq

public java.lang.String getEndSeq()

isBeginSeqDefault

public boolean isBeginSeqDefault()

isEndSeqDefault

public boolean isEndSeqDefault()

isOpenFileDefault

public boolean isOpenFileDefault()

isDBNameDefault

public boolean isDBNameDefault()

isSIDDefault

public boolean isSIDDefault()

isUFODefault

public boolean isUFODefault()

getFormatChoosen

public java.lang.String getFormatChoosen()

getInputSeqAttr

public java.lang.String getInputSeqAttr(int seq)